Mathématiques et Informatique Appliquées du Génome à l'Environnement (MaIAGE)

Laboratory presentation

MaIAGE is made up of mathematicians, computer scientists, biocomputational scientists and biologists working together in the fields from biology and agro-environment friendly solutions, from the molecular scale to the study of individual beings, populations of ecosystems. MaIAGE develops mathematical and computational methods in order to overcome specific biological issues. It also has a hand in creating databases and software allowing biologists to use tools in the right conditions, or even exploit scientific litterature automatically.

Statistical inference and dynamic modelling are some of the unit's highest expertises, to which biocomputation, automation and algorythmics can be added. The research and engineering activities are also highly intertwined with the avenues they are aimed at, such as sustainable development, molecular biology and the biology of systems.

The 20 latest publications

Title Authors Publication date Source
Clarification on the implementation of the Nagoya Protocol in France for the access and sharing of benefits arising from the utilization of microbial genetic resources Michel Yves Mistou 03/01/24 International Journal of Systematic and Evolutionary Microbiology
Optimal enzyme profiles in unbranched metabolic pathways Wolfram Liebermeister 02/09/24 Interface Focus
The ocular mathematical virtual simulator: A validated multiscale model for hemodynamics and biomechanics in the human eye Lorenzo Sala 02/01/24 International Journal for Numerical Methods in Biomedical Engineering
Model-based clustering of multiple networks with a hierarchical algorithm Tabea Rebafka 02/01/24 Statistics and Computing
Bayesian high-dimensional covariate selection in non-linear mixed-effects models using the SAEM algorithm Renaud Rincent 02/01/24 Statistics and Computing
Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy: An Age-Related Study in Mdx Mice Mahendra Mariadassou, Olivier Rué 02/01/24 American Journal of Pathology
Multi-omics data integration for the identification of biomarkers for bull fertility Valentin Costes, Eli Sellem, Aurélie Bonnet, Hélène Kiefer 02/01/24 PLoS ONE
Two level natural selection with a quasi-stationarity approach Aurélien Velleret 02/01/24 Discrete and Continuous Dynamical Systems - Series B
Sex-specific transcriptome of the chicken chorioallantoic membrane Christelle Hennequet-Antier 01/01/24 Genomics
neo4jsbml: import systems biology markup language data into the graph database Neo4j Sandra Dérozier 01/01/24 PeerJ
A neural-mechanistic hybrid approach improving the predictive power of genome-scale metabolic models Wolfram Liebermeister 12/01/23 Nature Communications
Direct comparison of spatial transcriptional heterogeneity across diverse Bacillus subtilis biofilm communities P. Nicolas, Sandra Dérozier 12/01/23 Nature Communications
Cooperative cell–cell actin network remodeling to perform Gap junction endocytosis Alain Trubuil 12/01/23 Basic and Clinical Andrology
An analysis of entity normalization evaluation biases in specialized domains Arnaud Ferré 12/01/23 BMC Bioinformatics
A successive time-to-event model of phyllochron dynamics for hypothesis testing: application to the analysis of genetic and environmental effects in maize Elodie Marchadier, Adrienne Ressayre, Christine Dillmann 12/01/23 Plant Methods
TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images Elise Laruelle, Alain Trubuil 12/01/23 Plant Methods
Thermal conditioning of quail embryos has transgenerational and reversible long-term effects Christelle Hennequet-Antier 12/01/23 Journal of Animal Science and Biotechnology
Four functional profiles for fibre and mucin metabolism in the human gut microbiome Simon Labarthe, Sandra Plancade, Sebastien Raguideau, Beatrice Laroche 12/01/23 Microbiome
Data-Driven Score-Based Models for Generating Stable Structures with Adaptive Crystal Cells Tabea Rebafka 11/27/23 Journal of Chemical Information and Modeling
Stochastic models of regulation of transcription in biological cells Vincent Fromion 11/01/23 Journal of Mathematical Biology

Number of publications of the laboratory by scientific field (2016-2021)

Every paper can be classified in one or more scientific fields. The figure below shows the lab's number of publications in each scientific field, according to the ASJC classification (Elsevier)